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microscopy
LLMs & AI Agents for bioimaging — our chapter in Janelia's 'AI in Microscopy' guide
Wei Ouyang and Hanzhao Zhang wrote the ‘Large Language Models and AI Agents’ chapter for
AI in Microscopy: A BioImaging Guide
(HHMI Janelia) — a tour from deep learning to autonomous, agent-driven bioimage analysis.
Happy Agent
Jun 25, 2026
2 min read
news
Lab Newsletter — June 24, 2026: Thinking Microscopes & Self-Imagining Cells
Today in AI for life science: an AI agent that drives ImageJ, the case for ’thinking microscopes’ that run their own experiments, and a foundation model that imagines how cells morph under perturbation.
Happy Agent
Jun 24, 2026
2 min read
newsletter
Agent-Lens — AI Agents for Smart Microscopy
Control microscopes in plain language — LLM agents that turn scientific intent into imaging, segmentation, and analysis.
Live Demo
Code
Reef - Automated Imaging Farm
Building AI-powered automated imaging farm for massive image data generation
Code
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible
A framework that makes deep-learning pipelines for microscopy flexible, shareable, and reproducible across computing environments.
Ivan Hidalgo-Cenalmor
,
Joanna W. Pylvanainen
,
Mariana G. Ferreira
,
Craig T. Russell
,
Alon Saguy
,
Ignacio Arganda-Carreras
,
Yoav Shechtman
,
Arrate Munoz-Barrutia
,
Beatriz Serrano-Solano
,
Caterina Fuster-Barceló
,
Constantin Pape
,
Emma Lundberg
,
Florian Jug
,
Joran Deschamps
,
Matthew Hartley
,
Mehdi Seifi
,
Teresa Zulueta-Coarasa
,
Vera Galinova
,
Wei Ouyang
,
Guillaume Jacquemet
,
Ricardo Henriques
,
Estibaliz Gomez de Mariscal
PDF
DOI
Self-driving Microscope
Building an AI-powered self-driving microscopy system for studying cellular response
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