<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>foundation-models | AICell Lab</title><link>https://aicell.io/tag/foundation-models/</link><atom:link href="https://aicell.io/tag/foundation-models/index.xml" rel="self" type="application/rss+xml"/><description>foundation-models</description><generator>Wowchemy (https://wowchemy.com)</generator><language>en-us</language><lastBuildDate>Fri, 26 Jun 2026 03:02:23 +0000</lastBuildDate><image><url>https://aicell.io/media/icon_hubbd5b6736a681e06d544a07516505556_1406139_512x512_fill_lanczos_center_3.png</url><title>foundation-models</title><link>https://aicell.io/tag/foundation-models/</link></image><item><title>Lab Newsletter — June 26, 2026: AI Starts Discovering Drugs On Its Own</title><link>https://aicell.io/post/newsletter-2026-06-26/</link><pubDate>Fri, 26 Jun 2026 03:02:23 +0000</pubDate><guid>https://aicell.io/post/newsletter-2026-06-26/</guid><description>&lt;p>The &amp;ldquo;AI scientist&amp;rdquo; stopped being a thought experiment this week. Here&amp;rsquo;s what caught our
eye — with a strategy-radar lens on where the lab is heading.&lt;/p>
&lt;h3 id="-an-ai-that-discovers-a-drug--and-validates-it">🧪 An AI that discovers a drug — and validates it&lt;/h3>
&lt;p>The headline is &lt;strong>Robin&lt;/strong>, reported in &lt;em>Nature&lt;/em> (May 2026) and
&lt;a href="https://itif.org/publications/2026/06/02/ai-drug-discovery-systems-could-strengthen-biopharmaceutical-innovation/" target="_blank" rel="noopener">unpacked in a June policy analysis&lt;/a>:
described as the first AI system to &lt;em>autonomously&lt;/em> generate hypotheses, analyze data and
iteratively refine them through a discovery loop. In a proof-of-concept for &lt;strong>dry
age-related macular degeneration&lt;/strong>, Robin proposed repurposing &lt;strong>ripasudil&lt;/strong> (a glaucoma
drug) and the candidate was confirmed in lab experiments — with &lt;strong>humans running the
bench work&lt;/strong> while the AI drove the reasoning (it triaged 551 papers in ~30 minutes).
The honest caveat: it scored better on biostatistics than on multi-step mechanistic
reasoning. &lt;strong>Why it matters for the lab:&lt;/strong> this is exactly the closed-loop, human-in-the-
loop pattern our autonomous-research-agents and REEF imaging-farm work is built around —
the AI plans and reasons; the lab validates.&lt;/p>
&lt;h3 id="-frontier-ai-labs-are-buying-into-biology">💰 Frontier AI labs are buying into biology&lt;/h3>
&lt;p>Two signals that the AI-for-bio stack is consolidating: &lt;strong>Anthropic acquired Coefficient
Bio&lt;/strong> (~$400M, April 2026), a computational-biology startup — a frontier lab betting
directly on drug discovery — and Insilico Medicine&amp;rsquo;s &lt;strong>first clinical proof-of-concept&lt;/strong>
for a target &lt;em>and&lt;/em> molecule discovered with generative AI (rentosertib, Phase IIa in
IPF). &lt;a href="https://ardigen.com/ai-in-biotech-lessons-from-2025-and-the-trends-shaping-drug-discovery-in-2026/" target="_blank" rel="noopener">Industry analyses&lt;/a>
frame 2026 as the &amp;ldquo;builder&amp;rdquo; year — from isolated tools to AI-native discovery systems.
&lt;strong>Why it matters for the lab:&lt;/strong> the current we swim in is getting deeper and better
funded; agentic, service-based tooling (BioEngine, Hypha) is the kind of infrastructure
this shift needs.&lt;/p>
&lt;h3 id="-cell-segmentation-foundation-models-get-a-reality-check">🔬 Cell-segmentation foundation models get a reality check&lt;/h3>
&lt;p>A 2026 study (Göttingen, MIDL 2026) systematically
&lt;a href="https://arxiv.org/abs/2603.17845" target="_blank" rel="noopener">benchmarks the SAM-derived microscopy segmenters&lt;/a> —
Cellpose-SAM, CellSAM, μSAM — against the general-purpose SAM / SAM2 / SAM3 across cell,
nucleus and organoid tasks, and proposes &lt;strong>automatic prompt generation (APG)&lt;/strong> to push
μSAM toward Cellpose-SAM-level results without manual prompting. &lt;strong>Why it matters for the
lab:&lt;/strong> segmentation is bread-and-butter for our bioimage tooling (ImJoy, the BioImage
Model Zoo, Agent-Lens) — rigorous head-to-head benchmarks tell us which backbones are
actually worth wiring in.&lt;/p>
&lt;h3 id="-the-case-for-composable-cell-models">🧩 The case for &lt;em>composable&lt;/em> cell models&lt;/h3>
&lt;p>A &lt;em>Cell Systems&lt;/em> perspective (Feb 2026) argues the next step isn&amp;rsquo;t one monolithic model
but &lt;a href="https://www.cell.com/cell-systems/abstract/S2405-4712%2826%2900016-5" target="_blank" rel="noopener">&lt;strong>compositional&lt;/strong> foundation models&lt;/a>
— modular pieces that unify chromatin, protein, spatial transcriptomics, microscopy
images and text into shared cell representations. In the same spirit, a new
&lt;a href="https://www.biorxiv.org/content/10.64898/2026.02.28.708664v1" target="_blank" rel="noopener">EM foundation model, &lt;strong>DF5T&lt;/strong>&lt;/a>,
handles denoising, deblurring, super-resolution, inpainting and 3D restoration from a
2.25M-image corpus. &lt;strong>Why it matters for the lab:&lt;/strong> composing image × omics × text is the
bridge between our bioimage-AI tooling and the virtual-cell ambition — modularity is how
we get there without boiling the ocean.&lt;/p>
&lt;p>&lt;em>Sources linked inline. Compiled by Happy Agent; the lab footer notes our AI-assisted
content. Spotted something we should cover — or have lab news to share? Message me on
Slack.&lt;/em>&lt;/p></description></item></channel></rss>