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bioimage-analysis
U-FISH: a fluorescent spot detector for imaging-based spatial-omics analysis
A universal deep-learning approach for accurate FISH spot detection across imaging-based spatial-omics datasets.
Weize Xu
,
Huaiyuan Cai
,
Qian Zhang
,
Zhengze Wang
,
Jiajun Yang
,
Xiaofeng Wu
,
Chengwen Li
,
Chenghua Cui
,
Changzhi Liu
,
He Jin
,
Florian Mueller
,
Jinxia Dai
,
Hao Chen
,
Wei Ouyang
,
Gang Cao
PDF
DOI
ImageJ.JS — ImageJ in Your Browser
The classic ImageJ, reimagined to run entirely in the web browser — no installation, full plugin support, and AI assistance.
Launch App
Code
BioImage.IO Chatbot — Your AI Assistant for Bioimage Analysis
A community-driven, AI-powered assistant that helps researchers navigate bioimaging tools, databases and services — and autonomously runs analysis tasks from plain-language prompts. Published in Nature Methods.
PDF
Try it
Nature Methods
Code
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible
A framework that makes deep-learning pipelines for microscopy flexible, shareable, and reproducible across computing environments.
Ivan Hidalgo-Cenalmor
,
Joanna W. Pylvanainen
,
Mariana G. Ferreira
,
Craig T. Russell
,
Alon Saguy
,
Ignacio Arganda-Carreras
,
Yoav Shechtman
,
Arrate Munoz-Barrutia
,
Beatriz Serrano-Solano
,
Caterina Fuster-Barceló
,
Constantin Pape
,
Emma Lundberg
,
Florian Jug
,
Joran Deschamps
,
Matthew Hartley
,
Mehdi Seifi
,
Teresa Zulueta-Coarasa
,
Vera Galinova
,
Wei Ouyang
,
Guillaume Jacquemet
,
Ricardo Henriques
,
Estibaliz Gomez de Mariscal
PDF
DOI
Introducing Jeremy Metz: A Multifaceted Research Engineer Joins AICell Lab
We are delighted to welcome Jeremy, a Research Engineer with diverse expertise in computer vision, computational biology, and modelling. His arrival marks an exciting chapter in AICell Lab’s journey towards advancing data-driven life sciences.
Wei Ouyang
Sep 21, 2023
4 min read
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