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Agent-Lens — AI Agents for Smart Microscopy
Control microscopes in plain language — LLM agents that turn scientific intent into imaging, segmentation, and analysis.
Code
Restless Multi-Process Multi-Armed Bandits with Applications to Self-Driving Microscopies
A decision-theoretic framework (RMPMAB) for smart microscopy that decides when and where to image — modelling each region as an ensemble of Markov chains and using scalable Whittle-index policies to capture 93% more biologically relevant events under fixed acquisition, compute, and photobleaching budgets.
Jaume Anguera Peris
,
Songtao Cheng
,
Hanzhao Zhang
,
Wei Ouyang
,
Joakim Jaldén
PDF
Project
DOI
Octopi 2.0: Open and Scalable Microscopy Platform for AI-powered Diagnostic Applications
An open, highly configurable, general-purpose automated microscopy platform for low-cost, high-throughput diagnostics — including malaria screening, sickle cell anemia, and antibiotic resistance — designed for use in low-resource settings.
Hongquan Li
,
Heguang Lin
,
Pranav Shrestha
,
Rinni Bhansali
,
You Yan
,
Jaspreet Pannu
,
Kevin Marx
,
Wei Ouyang
,
Lucas Fuentes Valenzuela
,
Ethan Li
,
Anesta Kothari
,
Jerome Nowak
,
Hazel Soto-Montoya
,
Adil Jussupov
,
Maxime Voisin
,
Kajal Maran
,
Oswald Byaruhanga
,
Joaniter Nankabirwa
,
Bryan Greenhouse
,
Prasanna Jagannathan
,
Manu Prakash
PDF
DOI
Adapting Video Diffusion Models for Time-Lapse Microscopy
A domain adaptation of video diffusion models that generates realistic time-lapse microscopy videos of dividing HeLa cells — conditioned on phenotype measurements or an initial frame — capturing mitosis and migration for in-silico hypothesis testing and data augmentation.
Alexander Holmberg
,
Nils Mechtel
,
Wei Ouyang
PDF
DOI
BioImage.IO Chatbot — Your AI Assistant for Bioimage Analysis
A community-driven, AI-powered assistant that helps researchers navigate bioimaging tools, databases and services — and autonomously runs analysis tasks from plain-language prompts. Published in Nature Methods.
PDF
Try it
Nature Methods
Code
Welcoming Yanhong Su to the AICell Lab: Spearheading the Self-Driving Microscopy Project
AICell Lab joyfully welcomes Yanhong Su as our new postdoctoral researcher. With her expertise in oncology, Yanhong will be a key contributor to our self-driving microscopy project.
Wei Ouyang
Dec 13, 2023
3 min read
news
Introducing Gabriel Reder: A Dynamic Postdoc Researcher Joins AICell Lab
We are ecstatic to welcome Gabriel, a Postdoc Researcher with a rich background in automated scientific discovery, computational biology, AI, and lab robotics. His addition to the AICell Lab team promises new avenues in our mission of advancing data-driven life sciences.
Wei Ouyang
Oct 23, 2023
3 min read
news
Introducing Linh Duong: Bridging Biology and AI at AICell Lab
We’re excited to introduce Linh, a Researcher with dual expertise in molecular biology and machine learning. His arrival opens new avenues for AICell Lab in automated cell manipulation and imaging.
Wei Ouyang
Sep 28, 2023
4 min read
news
Introducing Jeremy Metz: A Multifaceted Research Engineer Joins AICell Lab
We are delighted to welcome Jeremy, a Research Engineer with diverse expertise in computer vision, computational biology, and modelling. His arrival marks an exciting chapter in AICell Lab’s journey towards advancing data-driven life sciences.
Wei Ouyang
Sep 21, 2023
4 min read
news
A Landmark Welcome to Songtao Cheng, AICell Lab's First PhD Student
The AICell Lab is thrilled to welcome our first PhD student, Songtao Cheng, this coming October. His multidisciplinary expertise in machine learning, lab automation, and biological wet lab skills will be instrumental in advancing our research projects.
Wei Ouyang
Sep 19, 2023
3 min read
news
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